For users to be transparently authenticated in AD FS SAML Integration, do the following:
Option I: Through Group Policy Object
- Open the Group Policy Management Console. Create either a new Group Policy Object (GPO) or edit an existing GPO.
- Expand Computer Configuration, expand Policies, expand Administrative Templates, expand Windows Components, expand Internet Explorer, expand Internet Control Panel, and then click Security Page.
- In the details pane, double-click Site to Zone Assignment List.
- In the Site to Zone Assignment List Properties dialog box, click Enabled.
- In the Site to Zone Assignment List Properties dialog box, click Show.
- In the Show Contents dialog box, click Add.
- In the Add Item dialog box, type the ADFS URL of SAML SSO service (for example, https://cwaserver.contoso.com) in the Enter the name of the item to be added box.
- Type 1 (indicating the local intranet zone) in the Enter the value of the item to be added box, and then click OK.
- In the Show Contents dialog box, click OK.
- In the Site to Zone Assignment List dialog box, click OK.
- In the Group Policy Management Editor, click Intranet Zone.
- In the details pane, double-click Logon options.
- In the Logon options Properties dialog box, click Enabled.
- In the Logon options list, click Automatic logon only in Intranet zone, and then click OK.
- Close the Group Policy Management Editor.
Option II: Through Internet Explorer Browser
- Open the Internet Options dialog box by choosing Internet Options either from Control Panel or from the Tools menu in Internet Explorer.
- In the Internet Options dialog box, on the Security tab, select Local intranet, and then click Custom Level.
- In the Security Settings dialog box, under Logon, select Automatic logon only in Intranet zone, and then click OK.
- In the Internet Options dialog box on the Security Settings tab with Local intranet still selected, click Sites.
- In the Local intranet dialog box, click Advanced.
- In the next dialog box (also titled Local intranet), type the URL of your Communicator Web Access site (for example, https://cwaserver.contoso.com) in the Add this Web site to the zone box, and then click Add.
- In the Local intranet dialog, box click OK.
- In the original Local intranet dialog box, click OK.
- In the Internet Options dialog box, click OK.
Reference: Configuring Internet Explorer for Automatic Logon
For the complete details, refer to the article Enabling NTLM Authentication (Single Sign-On) in Firefox
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Enable Windows Authentication for AD FS 3.0.
Refer to the following articles:
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Disable Extended Protection Token Check.
Refer to the Microsoft KB article: Configuring Advanced Options for AD FS 2.0.
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Configure/Set AD FS 3.0 Server as servicePrincipalName (SPN).
Refer to the following articles:
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Use A Record for AD FS 3.0 (Optional).
Refer to the Microsoft forum topic: AD FS Windows Authentication Throws 400 Bad Request.